Fastest way to read and parse ascii file from sdcard - android

I am working on an app that will allow the user to select an ascii text file (typically from the sdcard) that contains the data required to render a shape in opengl. The file format looks something like this (there are some other lines containing less relevant data):
normal -1.000000e+000 -5.551115e-016 0.000000e+000
vertex 1.387779e-014 0.000000e+000 1.000000e+001
vertex 0.000000e+000 2.500000e+001 1.000000e+001
vertex 1.387779e-014 0.000000e+000 0.000000e+000
The typical file could be around 5mb and contains around 120,000+ lines of data. I have tried several approaches to reading and parsing the file and I can't seem to get it to read the file and parse the data in less than about 90 seconds - which is obviously slower than I would like.
I have tried three approaches:
1) I read the file line by line and used the string split method with space as the delimiter
2) I then tried using the streamtokenizer to create a list of tokens (strings) for each word/number in the file. I then went through the list, filling arraylists with the data I needed (the numbers for the vertices in one list and the numbers for the normals in another). Again, this worked but was slow. Relevant blocks of code:
File f = new File(Environment.getExternalStorageDirectory()+"/"+filename);
int fLen = (int)f.length();
Log.d("msg:", "File contains " + fLen + " Characters");
try {
FileReader file = new FileReader(f);
buf = new BufferedReader(file);
FileParser st = new FileParser(buf);
while (st.nextToken() != st.TT_EOF) {
if (st.ttype==st.TT_WORD){
if (st.sval.equals("vertex"))
{
st.nextToken();
vertices.add((Double.valueOf(st.sval).floatValue()));
st.nextToken();
vertices.add((Double.valueOf(st.sval).floatValue()));
st.nextToken();
vertices.add((Double.valueOf(st.sval).floatValue()));
indices.add((short)(nodeCount-1));
}
}
}
The streamtokenizer is initialized as follows:
public class FileParser extends StreamTokenizer
{
public FileParser(Reader r)
{
super(r);
setup();
}
public void setup()
{
resetSyntax();
eolIsSignificant(true);
lowerCaseMode(true);
wordChars('!', '~');
whitespaceChars(' ', ' ');
whitespaceChars('\n', '\n');
whitespaceChars('\r', '\r');
whitespaceChars('\t', '\t');
}// End setup
}
3) Based on an article I read about counting words in a text file that said that streamtokenizers are slow compared to using a char buffer, I tried reading the file into a large char buffer (in chunks where necessary). I saw some improvement but only maybe 20%. Relevant code:
FileReader file = new FileReader(f);
char pos = "+".charAt(0);
char neg = "-".charAt(0);
char dec = ".".charAt(0);
float[] normalVector=new float[3];
int bufSize=500000;
int offset=0;
char[] buffer=new char[bufSize];
while ((len=file2.read(buffer,offset,bufSize-offset)) != -1) {
index=0;
while (index < len+offset) {
while ((index < (len+offset)) && !Character.isLetterOrDigit(buffer[index]) && !(buffer[index]==pos) && !(buffer[index]==neg) && !(buffer[index]==dec)) {
index++;
if ((index>bufSize-20)&&(len+offset==bufSize)) {
offset=len+offset-index;
for(int i=0; i<offset; i++){
buffer[i]=buffer[index+i];
}
index=len+offset;
}
}
start = index;
while ((index < (len+offset)) && ((Character.isLetterOrDigit(buffer[index]) || buffer[index]==pos || buffer[index]==neg) || buffer[index]==dec)) {
index++;
}
if (start < (len+offset)) {
text = String.copyValueOf(buffer, start, index-start);
if (text.equals("vertex")) {
xyz=1;
} else if (xyz>0) {
vertices.add((Double.valueOf(text).floatValue()));
xyz=xyz+1;
if (xyz==4){
nodeCount++;
indices.add((short)(nodeCount-1));
xyz=0;
}
}
}
}
}
There must be some sort of bottleneck that I am missing. Any ideas?

Related

use char as an operator?

I am making an android app + arduino that will receive ir code from arduino and sending the results.value (ir decode) to android through bluetooth. on the android side I have receive the code as a String that results into (for example) 92c0 then made a test button that will send it back to arduino and trigger it to send ir code to a device by irsend.sendNEC(0x92c0, 32) problem is when receiving the codes back from the android app is I have to receive it by char data, how do I use data which is a char and use it as a substitute for 0x92c0 in irsend.sendN My sketch down below:
#include <IRremote.h>
#include <SoftwareSerial.h>
SoftwareSerial bluetoothPort(4,5);
const int RECV_PIN = 12;
char data = "0";
const int SEND_PIN = 13;
IRsend irsend;
IRrecv irrecv(RECV_PIN);
decode_results results;
int BTval;
int IRval;
void setup()
{
bluetoothPort.begin(9600);
Serial.begin(9600);
irrecv.enableIRIn();
}
void loop()
{
if(bluetoothPort.available() > 0)
{
data = bluetoothPort.read();
Serial.print(data);
irsend.sendNEC(operator[data],32);
irrecv.resume();
}
if(irrecv.decode(&results))
{
Serial.println(results.value);
int set = results.value;
bluetoothPort.println(results.value, HEX);
irrecv.resume();
}
}
The problem here is that you CAN'T transfer 0x92c0 as a char (or byte). Just because it is not a byte, but two.
Now, I'm not much into android, so I need to see the android code to make a real solution You can handle this in three ways:
Binary transfer the data (2 bytes)
Transfer the data as a string (5 bytes)
Index the possible replies in an array and transfer the index (only applicable for a small quantity of codes).
I'm showing you the last 2, because the 1st is the most effective but I don't think you have the proper knowledge to send and receive data in binary format from android (and surely I don't have it).
So, if the data is transferred in string format (the same way you are uploading it) you will receive more bytes:
1 to 4 hexadecimal digits
1 carriage return
The code just stores the bytes you receive in a variable and then sends it when you receive a CR or LF:
// Outside the loop function
uint16_t receivedData;
// Inside the loop function
if(bluetoothPort.available() > 0)
{
data = bluetoothPort.read();
if ((data >= '0') && (data <= '9'))
{ // If it is a digit between 0 and 9 (in ascii)
receivedData = (receivedData << 4) | (data - '0');
}
else if ((data >= 'A') && (data <= 'F'))
{ // If it is a digit between A and F (in ascii)
receivedData = (receivedData << 4) | (data - 'A' + 10);
}
else if ((data >= 'a') && (data <= 'f'))
{ // Lowercase case
receivedData = (receivedData << 4) | (data - 'a' + 10);
}
else if (((data == '\r') || (data == '\n')) && (receivedData > 0))
{ // I tend to consider both CR and LF, because windows always screws this
Serial.print(receivedData, HEX);
irsend.sendNEC(receivedData,32); // Not sure about the 32 here...
irrecv.resume();
receivedData = 0;
}
else
receivedData = 0; // Something went wrong, just reset the variable
}
If you just have to send a few codes, you can store them and then transfer only the proper index. For instance:
// Outside the loop function
uint16_t possibleCodes[] = { 0x92c0, 0x8238, 0x5555 };
// Inside the loop function
if(bluetoothPort.available() > 0)
{
data = bluetoothPort.read();
// If you are using string transmission, use the following
// line to get the correct value
// data = bluetoothPort.read() - '0';
if (data < sizeof(possibleCodes) / sizeof(possibleCodes[0]))
{
Serial.print(possibleCodes[data], HEX);
irsend.sendNEC(possibleCodes[data],32); // Not sure about the 32 here...
irrecv.resume();
}
}
For instance in this case to send 0x92c0 you will have to send from android the value 0.

Writing bytes to a wav file adds background noise

I am reading values from a wav file; selecting only some of those values and writing them into another wav file (inorder to remove silence periods from the wav file). The problem is, that when I am creating this new wav file, it has background noise (which is not present in the original wav file). I am adding here the part of the code which is doing the file writing part:
private void writeToFile(String filePath) {
short nChannels = 1;
int sRate = 16000;
short bSamples = 16;
audioShorts = new short[size];
int nSamples = 0;
for(int i=0; i<size-1; i++) {
//audioShorts[i] = Short.reverseBytes((short)(zff[i]*0x8000));
if(slope[i] >= slopeThreshold) { // Voice region -- Should be written to output
audioShorts[nSamples] = Short.reverseBytes((short)(a[i]*0x8000));
audioShorts[nSamples+1] = Short.reverseBytes((short)(a[i+1]*0x8000));
nSamples += 2;
i++;
}
/*else
audioShorts[i] = 0;*/
}
finalShorts = new short[nSamples];
for(int i=0; i<nSamples; i++){
finalShorts[i] = audioShorts[i];
}
data = new byte[finalShorts.length*2];
ByteBuffer buffer = ByteBuffer.wrap(data);
ShortBuffer sbuf = buffer.asShortBuffer();
sbuf.put(finalShorts);
data = buffer.array();
Log.d("Data length------------------------------", Integer.toString(data.length));
RandomAccessFile randomAccessWriter;
try {
randomAccessWriter = new RandomAccessFile(filePath, "rw");
randomAccessWriter.setLength(0); // Set file length to 0, to prevent unexpected behaviour in case the file already existed
randomAccessWriter.writeBytes("RIFF");
randomAccessWriter.writeInt(Integer.reverseBytes(36+data.length)); // File length
randomAccessWriter.writeBytes("WAVE");
randomAccessWriter.writeBytes("fmt ");
randomAccessWriter.writeInt(Integer.reverseBytes(16)); // Sub-chunk size, 16 for PCM
randomAccessWriter.writeShort(Short.reverseBytes((short) 1)); // AudioFormat, 1 for PCM
randomAccessWriter.writeShort(Short.reverseBytes(nChannels));// Number of channels, 1 for mono, 2 for stereo
randomAccessWriter.writeInt(Integer.reverseBytes(sRate)); // Sample rate
randomAccessWriter.writeInt(Integer.reverseBytes(sRate*bSamples*nChannels/8)); // Byte rate, SampleRate*NumberOfChannels*BitsPerSample/8
randomAccessWriter.writeShort(Short.reverseBytes((short)(nChannels*bSamples/8))); // Block align, NumberOfChannels*BitsPerSample/8
randomAccessWriter.writeShort(Short.reverseBytes(bSamples)); // Bits per sample
randomAccessWriter.writeBytes("data");
randomAccessWriter.writeInt(Integer.reverseBytes(data.length)); // No. of samples
randomAccessWriter.write(data);
randomAccessWriter.close();
} catch (FileNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
Your code snippet leaves some details out (like what slope and slopeThreshold are), so treat this answer as a suggestion only.
In general, this kind of chopping of audio data will introduce noise. It depends on where the cut happens. If the last sample before a cut is identical to the first one after it, you're safe, but otherwise you will introduce a click.
If the cuts are infrequent, you will be hearing individual clicks but if the chopping happens often enough, it might sound like continuous noise.
To do this without clicks, you would need to add a short fade out and fade in around each cut.
EDIT: try removing the "if (slope[i] >= slopeThreshold)" condition and see if the noise disappears. If so, the noise is very likely a result of what I described. Otherwise, you probably have some error with the various byte conversions.
Instead of:
data = new byte[finalShorts.length*2];
ByteBuffer buffer = ByteBuffer.wrap(data);
ShortBuffer sbuf = buffer.asShortBuffer();
sbuf.put(finalShorts);
data = buffer.array();
would not it be necessary to convert from short [] to byte [] ?
data = shortToBytes(finalShorts);
public byte [] shortToBytes(short [] input){
int short_index, byte_index;
int iterations = input.length;
byte [] buffer = new byte[input.length * 2];
short_index = byte_index = 0;
for(/*NOP*/; short_index != iterations; /*NOP*/)
{
buffer[byte_index] = (byte) (input[short_index] & 0x00FF);
buffer[byte_index + 1] = (byte) ((input[short_index] & 0xFF00) >> 8);
++short_index; byte_index += 2;
}
return buffer;
}
This work for me.

Why does SKIA not use a custom FilterInputStream?

I'm trying to decode a bitmap from an extended FilterInputStream. I have to perform on-the-fly byte manipulation to the image data to provide a decodable image to SKIA, however it seems like SKIA ignores my custom InputStream and initializes one of its own...
When I run my test application, attempting to load in a 2mb large JPEG results in ObfuscatedInputStream.read([]) being called only once from BitmapFactory.decodeStream()
It seems like once the type of file is determined from the first 16kb of data retrieved from my ObfuscatedInputStream it initializes its own native stream and reads from that, effectively rendering all changes I make to how the input stream should work useless...
Here is the buffered read function in my extended FilterInputStream class. The Log.d at the top of the function is only executed once.
#Override
public int read(byte b[], int off, int len) throws IOException
{
Log.d(TAG, "called read[] with aval + " + super.available() + " len " + len);
int numBytesRead = -1;
if (pos == 0)
{
numBytesRead = fill(b);
if (numBytesRead < len)
{
int j;
numBytesRead += ((j = super.read(b, numBytesRead, len - numBytesRead)) == -1) ? 0 : j ;
}
}
else
numBytesRead = super.read(b, 0, len);
if (numBytesRead > -1)
pos += numBytesRead;
Log.d(TAG, "actually read " + numBytesRead);
return numBytesRead;
}
Has anyone ever encountered this issue? It seems like the only way to get my desired behavior is to rewrite portions of the SKIA library... I would really like to know what the point of the InputStream parameter is if the native implementation initializes a stream of its own...
turns out that it wasnt able to detect that it was an actual image from the first 1024 bytes it takes in. If it doesnt detect that the file is an actual image, it will not bother decoding the rest, hence only having read[] called once.

Scanner isn't reading the last int on each line because of my delimiter

I'm trying to read a simple text file shown below with the Scanner class and have a a delimiter set as scanner.useDelimiter(","); however as you can see there is no comma at the end of each line so the scanner doesn't read the last number on each line. Can anybody suggest how to solve this problem?
Thanks in advance for any help.
text file:
0,4,4,0,-4,2,2,8,16,20,20,12,8
1,6,7,1,-6,4,2,6,12,19,22,12,8
2,6,8,2,-7,5,2,4,11,19,23,14,8
3,4,8,4,-6,6,0,3,11,20,24,15,8
4,4,7,3,-5,5,0,0,12,20,24,16,10
here's my code too:
public class ECGFilereader { // reads the ecg files from the SD card
public final static int numChannels = 12; // the data is stored in 12 channels, one for each lead
public final static int numSamples = 6; //500 = fs so *6 for 6 seconds of data
public File file;
private Scanner scanner;
short [] [] ecg = new short [numChannels] [numSamples];
public ECGFilereader (String fname) throws FileNotFoundException
{
File file = new File(Environment.getExternalStorageDirectory() +"/1009856.txt"); //accesses the ecg file from the SD card
scanner = new Scanner(file);
scanner.useDelimiter(",");
}
public boolean ReadFile(Waveform[] waves) // sorts data into and array of an array (12 channels each containing 5000 samples)
{
for (int m=0; m<numSamples && scanner.hasNextInt(); m++) //
{
scanner.nextInt();
for (int chan = 0; chan<numChannels && scanner.hasNextInt(); chan++) //&& scanner.hasNextInt()
{
ecg [chan] [m] = (short) scanner.nextInt();
if (!scanner.hasNextInt())
{
if (scanner.hasNextLine())
{
scanner.nextLine();
//scanner.nextInt();
}
}
}
if (!scanner.hasNextInt())
{
if (scanner.hasNextLine())
{
scanner.nextLine();
//scanner.nextInt();
}
}
}
Should it perhaps be scanner.useDelimiter(",|\\n");
Because you want the compiler to put "\n" in the string rather than '\n' and the compiler will see the \ as an escape character.
The delimiter wasn't picking up the end of line still when set to scanner.useDelimiter(",|\\n");
I can't explain why exactly but it turns out I needed to add \r in there too like:
scanner.useDelimiter(",|\\r\\n");
Try like this:
public boolean ReadFile(Waveform[] waves) {
while(scanner.hasNextInt()){
if(scanner.hasNextInt()){
ecg [chan] [m] = (short) scanner.nextInt();
}
if(scanner.hasNextLine()){
scanner.nextLine();
}
}
}

Android append files to a zip file without having to re-write the entire zip file?

How can I append files to an existing zip file? I already have the code that can create a zip file and it works great except for one big problem. The way it works now, the user takes a bunch of pictures, and at the end, all the pictures get added to a zip file, which can take quite a while if you take enough pictures. :-( So I'm thinking, I have a very good and efficient solution. As the pictures are taken, I will simply add the each new picture to the zip file right after it's taken. Then when they're done taking pictures, finish up the zip file so it's usable and export it. :-)
The problem is, I can not get it to add files to an existing zip file. :-( Here's what I have so far. Also, please keep in mind, this is just a proof of concept, I do understand that re-initializing everything for every iteration of the for loop is very dumb. Each iteration of the loop is supposed to represent another file being added which will most likely be a long time later, maybe even an hour later, which is why I have everything resetting each iteration, because the app will be shut down between adding files. If I can get this working, then I will actually ditch the for loop and put this code into a function that gets called every time a picture gets taken. :-)
try {
for(int i=0; i < _files.size(); i++) {
//beginning of initial setup stuff
BufferedInputStream origin = null;
FileOutputStream dest = new FileOutputStream(_zipFile,false);
ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(dest));
byte data[] = new byte[BUFFER];
out.setLevel(0); //I added this because it makes it not compress the data
//at all and I hoped that it would allow the zip to be appended to
//end of initial setup stuff
//beginning of old for loop
Log.v("Compress", "Adding: " + _files[i]);
FileInputStream fi = new FileInputStream(_files[i]);
origin = new BufferedInputStream(fi, BUFFER);
ZipEntry entry = new ZipEntry(_files[i].substring(_files[i].lastIndexOf("/") + 1));
out.putNextEntry(entry);
int count;
while ((count = origin.read(data, 0, BUFFER)) != -1) {
out.write(data, 0, count);
}
origin.close();
//end of for old loop
//beginning of finishing stuff
out.close();
//end of finishing stuff
}
} catch(Exception e) {
Log.e("ZipCreation", "Error writing zip", e);
e.printStackTrace();
}
Also, I have experimented around with
FileOutputStream dest = new FileOutputStream(_zipFile,true);
If you notice, I set append to true, which will actually append the data to an existing file. And what's interesting is, it actually does append the data to the original file, however, after the file gets extracted on my computer, the last file written is all that gets extracted, which is bad. :-( So is there some way to start writing a zip file, and then later, add on to it, and finish up the zip file? I've even thought about possibly taking ZipOutputStream and modifying it to fit this model that I need. It should logically be possible somehow? :-)
Thanks in advance for the help! :-D
-Jared
Ok, thanks for all your suggestions, but I was able to get it working like I wanted.... it CAN be done, you CAN add files after closing the file, as long as you save your place!!! :-D
Here's how I was able to get it going working:
try {
for(int i=0; i < _files.size(); i++) {
//beginning of initial setup stuff
BufferedInputStream origin = null;
FileOutputStream dest = new FileOutputStream(_zipFile,true);
ZipOutputStreamNew out = new ZipOutputStreamNew(new BufferedOutputStream(dest));
byte data[] = new byte[BUFFER];
if (havePreviousData) {
out.setWritten(tempWritten);
out.setXentries(tempXentries);
}
//end of initial setup stuff
//beginning of for loop
Log.i("Compress", "Adding: " + _files.get(i));
FileInputStream fi = new FileInputStream(_files.get(i));
origin = new BufferedInputStream(fi, BUFFER);
TempString = _files.get(i).substring(_files.get(i).lastIndexOf("/") + 1);
ZipEntry entry = new ZipEntry(_paths.get(i) + TempString);
out.putNextEntry(entry);
int count;
while ((count = origin.read(data, 0, BUFFER)) != -1) {
out.write(data, 0, count);
}
origin.close();
out.closeEntry();
//end of for loop
//beginning of finishing stuff
if (i == (_files.size()-1)) {
//it's the last record so we should finish it off
out.closeAndFinish();
} else {
//close the file, but don't write the Central Directory
//first, back up where the zip file was...
tempWritten = out.getWritten();
tempXentries = out.getXentries();
havePreviousData = true;
//now close the file
out.close();
}
//end of finishing stuff
}
//zip succeeded
} catch(Exception e) {
Log.e("ZipCreation", "Error writing zip", e);
e.printStackTrace();
}
Also, keep in mind, this is not the only code I had to do. I also had to make my own copy of ZipOutputStream so that I could expose the following functions that I created within my ZipOutputStreamNew class....
getWritten()
getXentries()
as well as
setWritten(long mWritten)
setXentries(Vector<XEntry> mXEntries)
For the most part, all this does, is it starts writing like normal, then, instead of closing like normal, it backs up those two variables, and then for the next iteration, it restores just those variables.
Let me know if you have any questions about all this, but I knew it would work, all it has to do is save where it was. :-D
Thanks again for all the help everybody! :-)
At Raj's request, here is the source code for ZipOutputStreamNew:
/**
* This class implements an output stream filter for writing files in the
* ZIP file format. Includes support for both compressed and uncompressed
* entries.
*
* #author David Connelly
* #version %I%, %G%
*/
public class ZipOutputStreamNew extends DeflaterOutputStream implements ZipConstants {
public static class XEntry {
public final ZipEntry entry;
public final long offset;
public final int flag;
public XEntry(ZipEntry entry, long offset) {
this.entry = entry;
this.offset = offset;
this.flag = (entry.getMethod() == DEFLATED &&
(entry.getSize() == -1 ||
entry.getCompressedSize() == -1 ||
entry.getCrc() == -1))
// store size, compressed size, and crc-32 in data descriptor
// immediately following the compressed entry data
? 8
// store size, compressed size, and crc-32 in LOC header
: 0;
}
}
private XEntry current;
private Vector<XEntry> xentries = new Vector<XEntry>();
private HashSet<String> names = new HashSet<String>();
private CRC32 crc = new CRC32();
private long written = 0;
private long locoff = 0;
private String comment;
private int method = DEFLATED;
private boolean finished;
private boolean closed = false;
private boolean closeItPermanently = false;
private static int version(ZipEntry e) throws ZipException {
switch (e.getMethod()) {
case DEFLATED: return 20;
case STORED: return 10;
default: throw new ZipException("unsupported compression method");
}
}
/**
* Checks to make sure that this stream has not been closed.
*/
private void ensureOpen() throws IOException {
if (closed) {
throw new IOException("Stream closed");
}
}
/**
* Compression method for uncompressed (STORED) entries.
*/
public static final int STORED = ZipEntry.STORED;
/**
* Compression method for compressed (DEFLATED) entries.
*/
public static final int DEFLATED = ZipEntry.DEFLATED;
/**
* Creates a new ZIP output stream.
* #param out the actual output stream
*/
public ZipOutputStreamNew(OutputStream out) {
super(out, new Deflater(Deflater.DEFAULT_COMPRESSION, true));
usesDefaultDeflater = true;
}
/**
* Sets the ZIP file comment.
* #param comment the comment string
* #exception IllegalArgumentException if the length of the specified
* ZIP file comment is greater than 0xFFFF bytes
*/
public void setComment(String comment) {
if (comment != null && comment.length() > 0xffff/3
&& getUTF8Length(comment) > 0xffff) {
throw new IllegalArgumentException("ZIP file comment too long.");
}
this.comment = comment;
}
/**
* Sets the default compression method for subsequent entries. This
* default will be used whenever the compression method is not specified
* for an individual ZIP file entry, and is initially set to DEFLATED.
* #param method the default compression method
* #exception IllegalArgumentException if the specified compression method
* is invalid
*/
public void setMethod(int method) {
if (method != DEFLATED && method != STORED) {
throw new IllegalArgumentException("invalid compression method");
}
this.method = method;
}
/**
* Sets the compression level for subsequent entries which are DEFLATED.
* The default setting is DEFAULT_COMPRESSION.
* #param level the compression level (0-9)
* #exception IllegalArgumentException if the compression level is invalid
*/
public void setLevel(int level) {
def.setLevel(level);
}
/**
* Begins writing a new ZIP file entry and positions the stream to the
* start of the entry data. Closes the current entry if still active.
* The default compression method will be used if no compression method
* was specified for the entry, and the current time will be used if
* the entry has no set modification time.
* #param e the ZIP entry to be written
* #exception ZipException if a ZIP format error has occurred
* #exception IOException if an I/O error has occurred
*/
public void putNextEntry(ZipEntry e) throws IOException {
ensureOpen();
if (current != null) {
closeEntry(); // close previous entry
}
if (e.getTime() == -1) {
e.setTime(System.currentTimeMillis());
}
if (e.getMethod() == -1) {
e.setMethod(method); // use default method
}
switch (e.getMethod()) {
case DEFLATED:
break;
case STORED:
// compressed size, uncompressed size, and crc-32 must all be
// set for entries using STORED compression method
if (e.getSize() == -1) {
e.setSize(e.getCompressedSize());
} else if (e.getCompressedSize() == -1) {
e.setCompressedSize(e.getSize());
} else if (e.getSize() != e.getCompressedSize()) {
throw new ZipException(
"STORED entry where compressed != uncompressed size");
}
if (e.getSize() == -1 || e.getCrc() == -1) {
throw new ZipException(
"STORED entry missing size, compressed size, or crc-32");
}
break;
default:
throw new ZipException("unsupported compression method");
}
if (! names.add(e.getName())) {
throw new ZipException("duplicate entry: " + e.getName());
}
current = new XEntry(e, written);
xentries.add(current);
writeLOC(current);
}
/**
* Closes the current ZIP entry and positions the stream for writing
* the next entry.
* #exception ZipException if a ZIP format error has occurred
* #exception IOException if an I/O error has occurred
*/
public void closeEntry() throws IOException {
ensureOpen();
if (current != null) {
ZipEntry e = current.entry;
switch (e.getMethod()) {
case DEFLATED:
def.finish();
while (!def.finished()) {
deflate();
}
if ((current.flag & 8) == 0) {
// verify size, compressed size, and crc-32 settings
if (e.getSize() != def.getBytesRead()) {
throw new ZipException(
"invalid entry size (expected " + e.getSize() +
" but got " + def.getBytesRead() + " bytes)");
}
if (e.getCompressedSize() != def.getBytesWritten()) {
throw new ZipException(
"invalid entry compressed size (expected " +
e.getCompressedSize() + " but got " + def.getBytesWritten() + " bytes)");
}
if (e.getCrc() != crc.getValue()) {
throw new ZipException(
"invalid entry CRC-32 (expected 0x" +
Long.toHexString(e.getCrc()) + " but got 0x" +
Long.toHexString(crc.getValue()) + ")");
}
} else {
e.setSize(def.getBytesRead());
e.setCompressedSize(def.getBytesWritten());
e.setCrc(crc.getValue());
writeEXT(e);
}
def.reset();
written += e.getCompressedSize();
break;
case STORED:
// we already know that both e.size and e.csize are the same
if (e.getSize() != written - locoff) {
throw new ZipException(
"invalid entry size (expected " + e.getSize() +
" but got " + (written - locoff) + " bytes)");
}
if (e.getCrc() != crc.getValue()) {
throw new ZipException(
"invalid entry crc-32 (expected 0x" +
Long.toHexString(e.getCrc()) + " but got 0x" +
Long.toHexString(crc.getValue()) + ")");
}
break;
default:
throw new ZipException("invalid compression method");
}
crc.reset();
current = null;
}
}
/**
* Writes an array of bytes to the current ZIP entry data. This method
* will block until all the bytes are written.
* #param b the data to be written
* #param off the start offset in the data
* #param len the number of bytes that are written
* #exception ZipException if a ZIP file error has occurred
* #exception IOException if an I/O error has occurred
*/
public synchronized void write(byte[] b, int off, int len)
throws IOException
{
ensureOpen();
if (off < 0 || len < 0 || off > b.length - len) {
throw new IndexOutOfBoundsException();
} else if (len == 0) {
return;
}
if (current == null) {
throw new ZipException("no current ZIP entry");
}
ZipEntry entry = current.entry;
switch (entry.getMethod()) {
case DEFLATED:
super.write(b, off, len);
break;
case STORED:
written += len;
if (written - locoff > entry.getSize()) {
throw new ZipException(
"attempt to write past end of STORED entry");
}
out.write(b, off, len);
break;
default:
throw new ZipException("invalid compression method");
}
crc.update(b, off, len);
}
/**
* Finishes writing the contents of the ZIP output stream without closing
* the underlying stream. Use this method when applying multiple filters
* in succession to the same output stream.
* #exception ZipException if a ZIP file error has occurred
* #exception IOException if an I/O exception has occurred
*/
public void finish() throws IOException {
ensureOpen();
if (finished) {
return;
}
if (current != null) {
closeEntry();
}
if (xentries.size() < 1) {
throw new ZipException("ZIP file must have at least one entry");
}
if (closeItPermanently) {
// write central directory
long off = written;
for (XEntry xentry : xentries)
writeCEN(xentry);
writeEND(off, written - off);
finished = true;
//Log.e("ZipOutputStreamNew", "I just ran wrote the Central Directory Jared!");
}
//Log.e("ZipOutputStreamNew", "I just ran finish() Jared!");
}
/**
* Gets the value of the "xentries" variable (for later use)
* #return
*/
public Vector<XEntry> getXentries() {
return xentries;
//TODO convert this to primitive data types
}
/**
* Gets the value of the "written" variable (for later use)
* #return
*/
public long getWritten() {
return written;
}
/**
* Sets the value of the "xentries" variable (for later use)
* #return
*/
public void setXentries(Vector<XEntry> mXEntries) {
xentries = mXEntries;
//TODO convert this to primitive data types
}
/**
* Sets the value of the "written" variable (for later use)
* #return
*/
public void setWritten(long mWritten) {
written = mWritten;
}
/**
* Closes the ZIP output stream as well as the stream being filtered.
* #exception ZipException if a ZIP file error has occurred
* #exception IOException if an I/O error has occurred
*/
public void closeAndFinish() throws IOException {
if (!closed) {
closeItPermanently=true;
super.close();
closed = true;
}
}
/**
* Used to close the ZIP output stream as well as the stream being filtered.
* instead it does nothing :-P
* #exception ZipException if a ZIP file error has occurred
* #exception IOException if an I/O error has occurred
*/
public void close() throws IOException {
if (!closed) {
closeItPermanently=false;
super.close();
closed = true;
}
}
/*
* Writes local file (LOC) header for specified entry.
*/
private void writeLOC(XEntry xentry) throws IOException {
ZipEntry e = xentry.entry;
int flag = xentry.flag;
writeInt(LOCSIG); // LOC header signature
writeShort(version(e)); // version needed to extract
writeShort(flag); // general purpose bit flag
writeShort(e.getMethod()); // compression method
writeInt(e.getTime()); // last modification time
if ((flag & 8) == 8) {
// store size, uncompressed size, and crc-32 in data descriptor
// immediately following compressed entry data
writeInt(0);
writeInt(0);
writeInt(0);
} else {
writeInt(e.getCrc()); // crc-32
writeInt(e.getCompressedSize()); // compressed size
writeInt(e.getSize()); // uncompressed size
}
byte[] nameBytes = getUTF8Bytes(e.getName());
writeShort(nameBytes.length);
writeShort(e.getExtra() != null ? e.getExtra().length : 0);
writeBytes(nameBytes, 0, nameBytes.length);
if (e.getExtra() != null) {
writeBytes(e.getExtra(), 0, e.getExtra().length);
}
locoff = written;
}
/*
* Writes extra data descriptor (EXT) for specified entry.
*/
private void writeEXT(ZipEntry e) throws IOException {
writeInt(EXTSIG); // EXT header signature
writeInt(e.getCrc()); // crc-32
writeInt(e.getCompressedSize()); // compressed size
writeInt(e.getSize()); // uncompressed size
}
/*
* Write central directory (CEN) header for specified entry.
* REMIND: add support for file attributes
*/
private void writeCEN(XEntry xentry) throws IOException {
ZipEntry e = xentry.entry;
int flag = xentry.flag;
int version = version(e);
writeInt(CENSIG); // CEN header signature
writeShort(version); // version made by
writeShort(version); // version needed to extract
writeShort(flag); // general purpose bit flag
writeShort(e.getMethod()); // compression method
writeInt(e.getTime()); // last modification time
writeInt(e.getCrc()); // crc-32
writeInt(e.getCompressedSize()); // compressed size
writeInt(e.getSize()); // uncompressed size
byte[] nameBytes = getUTF8Bytes(e.getName());
writeShort(nameBytes.length);
writeShort(e.getExtra() != null ? e.getExtra().length : 0);
byte[] commentBytes;
if (e.getComment() != null) {
commentBytes = getUTF8Bytes(e.getComment());
writeShort(commentBytes.length);
} else {
commentBytes = null;
writeShort(0);
}
writeShort(0); // starting disk number
writeShort(0); // internal file attributes (unused)
writeInt(0); // external file attributes (unused)
writeInt(xentry.offset); // relative offset of local header
writeBytes(nameBytes, 0, nameBytes.length);
if (e.getExtra() != null) {
writeBytes(e.getExtra(), 0, e.getExtra().length);
}
if (commentBytes != null) {
writeBytes(commentBytes, 0, commentBytes.length);
}
}
/*
* Writes end of central directory (END) header.
*/
private void writeEND(long off, long len) throws IOException {
int count = xentries.size();
writeInt(ENDSIG); // END record signature
writeShort(0); // number of this disk
writeShort(0); // central directory start disk
writeShort(count); // number of directory entries on disk
writeShort(count); // total number of directory entries
writeInt(len); // length of central directory
writeInt(off); // offset of central directory
if (comment != null) { // zip file comment
byte[] b = getUTF8Bytes(comment);
writeShort(b.length);
writeBytes(b, 0, b.length);
} else {
writeShort(0);
}
}
/*
* Writes a 16-bit short to the output stream in little-endian byte order.
*/
private void writeShort(int v) throws IOException {
OutputStream out = this.out;
out.write((v >>> 0) & 0xff);
out.write((v >>> 8) & 0xff);
written += 2;
}
/*
* Writes a 32-bit int to the output stream in little-endian byte order.
*/
private void writeInt(long v) throws IOException {
OutputStream out = this.out;
out.write((int)((v >>> 0) & 0xff));
out.write((int)((v >>> 8) & 0xff));
out.write((int)((v >>> 16) & 0xff));
out.write((int)((v >>> 24) & 0xff));
written += 4;
}
/*
* Writes an array of bytes to the output stream.
*/
private void writeBytes(byte[] b, int off, int len) throws IOException {
super.out.write(b, off, len);
written += len;
}
/*
* Returns the length of String's UTF8 encoding.
*/
static int getUTF8Length(String s) {
int count = 0;
for (int i = 0; i < s.length(); i++) {
char ch = s.charAt(i);
if (ch <= 0x7f) {
count++;
} else if (ch <= 0x7ff) {
count += 2;
} else {
count += 3;
}
}
return count;
}
/*
* Returns an array of bytes representing the UTF8 encoding
* of the specified String.
*/
private static byte[] getUTF8Bytes(String s) {
char[] c = s.toCharArray();
int len = c.length;
// Count the number of encoded bytes...
int count = 0;
for (int i = 0; i < len; i++) {
int ch = c[i];
if (ch <= 0x7f) {
count++;
} else if (ch <= 0x7ff) {
count += 2;
} else {
count += 3;
}
}
// Now return the encoded bytes...
byte[] b = new byte[count];
int off = 0;
for (int i = 0; i < len; i++) {
int ch = c[i];
if (ch <= 0x7f) {
b[off++] = (byte)ch;
} else if (ch <= 0x7ff) {
b[off++] = (byte)((ch >> 6) | 0xc0);
b[off++] = (byte)((ch & 0x3f) | 0x80);
} else {
b[off++] = (byte)((ch >> 12) | 0xe0);
b[off++] = (byte)(((ch >> 6) & 0x3f) | 0x80);
b[off++] = (byte)((ch & 0x3f) | 0x80);
}
}
return b;
}
}
I believe it can't be done right now with the current API.
You can append data to any file, but that does not mean that you will end up with the right file format. A .zip file is not like a .tar file, and the compression requires imposes restrictions to the handling of the files (file positions, EOF, etc.). If you consider the structure of the file format (taken from wikipedia here) you will understand why just appending does not work.
There is a library called TrueZip that could work, although I do not know if it supports android. Take a look at this answer in another similar question:
Appending files to a zip file with Java .
Also, as a workaround, you could create individual .zip files and append them as a tarball (file format here). Compression might be slighty worst, but it would be much better in terms of time efficiency.
Update based on the comments (and possible solution)
You could separate the addition to each ZipEntry and leave the ZipOutputStream object open as long as you are still taking pictures. I can see risks with that approach, though, as any problem with the app while still taking pictures (a force close, run out of battery, etc) may render the whole file unusable. You will need to make sure to use the right try/catch/finally blocks to close the file and call closeZip() upon events such as onClose() and onDestroy(), but the idea would be the following:
import java.io.*;
import java.util.zip.*;
public class Zip {
static final int BUFFER = 2048;
ZipOutputStream out;
byte data[];
public Zip(String name) {
FileOutputStream dest = new FileOutputStream(name);
out = new ZipOutputStream(new BufferedOutputStream(dest));
data = new byte[BUFFER];
}
public void addFile (String name) {
FileInputStream fi = new FileInputStream(name);
BufferedInputStream origin = new BufferedInputStream(fi, BUFFER);
ZipEntry entry = new ZipEntry(name);
out.putNextEntry(entry);
int count;
while((count = origin.read(data, 0, BUFFER)) != -1) {
out.write(data, 0, count);
}
origin.close();
}
public void closeZip () {
out.close();
}
}

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