LibGDX game crash after migrating to Android Studio 3.4 - android

After migrating to Android Studio 3.4, the game now crashed. It works fine on 3.3. What does this mean?
org.gradle.execution.MultipleBuildFailures: Build completed with 1 failures.
at
Caused by: org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':android:transformDexWithInstantRunSlicesApkForDebug'
...
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: java.io.FileNotFoundException: /Users/limtc/AndroidStudioProjects/Space War/android/build/intermediates/instant_run_split_apk_resources/debug/instantRunSplitApkResourcesDebug/out/slice_1/resources_ap
,,,
Caused by: java.lang.RuntimeException: java.io.FileNotFoundException: /Users/limtc/AndroidStudioProjects/Space War/android/build/intermediates/instant_run_split_apk_resources/debug/instantRunSplitApkResourcesDebug/out/slice_1/resources_ap
...
Caused by: java.io.FileNotFoundException: /Users/limtc/AndroidStudioProjects/Space War/android/build/intermediates/instant_run_split_apk_resources/debug/instantRunSplitApkResourcesDebug/out/slice_1/resources_ap
...
After switching off instant run, I can now deploy to phone! But trying to generate bundle I now have:
org.gradle.execution.MultipleBuildFailures: Build completed with 1 failures.
...
Caused by: org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':android:lintVitalRelease'
...
Caused by: org.gradle.api.internal.artifacts.ivyservice.DefaultLenientConfiguration$ArtifactResolveException: Could not resolve all files for configuration ':android:lintClassPath'.
...
Caused by: org.gradle.internal.resolve.ArtifactResolveException: Could not download groovy-all.jar
Maybe now something goes offline? Thanks!

Based on the messages:
java.io.FileNotFoundException: /.../instant_run_split_apk_resources
I'd say, try disabling Instant Run.

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at com.squareup.moshi.kotlin.codegen.JsonClassCodegenProcessor.process(JsonClassCodegenProcessor.kt:114)
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When I then retry the build once or twice it works.
I know, this may be difficult to answer, so please add some comments, what I could try or which additional info you would need (unfortunately the project is not open-source): all comments/ideas are welcome.
Here are some thoughts that I have in mind:
maybe this is caused by insufficient memory (it's a quite large multi-module build)
maybe a timing issue of the build
maybe an error in the D8 Dexer
some more info:
the build is not doing any fancy stuff (android UI tests, etc.).
It just executes ./gradlew assembleDebug
com.android.tools.build:gradle 3.0.1
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> com.android.build.api.transform.TransformException: java.lang.IllegalArgumentException
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at com.android.build.gradle.internal.transforms.DexMergerTransformCallable.call(DexMergerTransformCallable.java:97)
at com.android.build.gradle.internal.transforms.DexMergerTransformCallable.call(DexMergerTransformCallable.java:35)

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